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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110281278_110282433_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
110281278 - 110282433
Intron Length:
1156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACAG
5'SS Class:
strong_major
3'SS Sequence:
CTTAATCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TCTATCTTAATC
Flanking Amino Acid:
HSLHPGEQPQSSPVLWRPWM
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
71.6
40.1
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
81
0.7
0.9
77.3
36.5
Minor 5ss
31.3
-2.1
3.1
38.3
46.6
Minor BPS
72
0.67
1.2
74.32
36.8

Associated Gene:

Gene:
RIPPLY3
Ensembl Gene ID:
ENSAPLG00000019819
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040033
110280751 - 110287306
6556