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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110282504_110286045_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
110282504 - 110286045
Intron Length:
3542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TCATTTTTAGCT
Flanking Amino Acid:
DGEMTENQQMSELDGQLMNF
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
75.6
29.3
Major BPS
79
0.72
1
78.4
31.2
Major PPT
85.9
0.81
0.8
79.9
32.1
Minor 5ss
36.2
-1.6
3.2
44.1
44.7
Minor BPS
62.9
0.48
1.5
75.9
41.2

Associated Gene:

Gene:
RIPPLY3
Ensembl Gene ID:
ENSAPLG00000019819
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040033
110280751 - 110287306
6556