About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110286114_110287133_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
110286114 - 110287133
Intron Length:
1020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTCTCTTCAAAT
Flanking Amino Acid:
KGALGFQHPVRLYLPKSKSQ
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.3
17.5
Major BPS
77.3
0.68
1
81.5
27
Major PPT
82.6
0.73
0.9
82.2
34.2
Minor 5ss
39.5
-1.2
2.8
49
47.2
Minor BPS
65
0.55
1.6
81.38
40.3

Associated Gene:

Gene:
RIPPLY3
Ensembl Gene ID:
ENSAPLG00000019819
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040033
110280751 - 110287306
6556