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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110309000_110309934_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
110309000 - 110309934
Intron Length:
935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AACTTTTTAATA
Flanking Amino Acid:
IMSYTRAIEFCPANHLLYGN
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.9
32.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
90.3
0.91
0.7
88.7
27.5
Minor 5ss
36.3
-1.6
3
48
41.5
Minor BPS
65.9
0.49
1.1
65.87
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019136
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027193
110300341 - 110310001
9661