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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110316923_110317274_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
110316923 - 110317274
Intron Length:
352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAGGTCTG
5'SS Class:
major
3'SS Sequence:
TGTTTGTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTATGTATAAAA
Flanking Amino Acid:
MHASCHNVTNIPRTESK
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
65.7
45.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
71.7
0.49
1
71.3
39.5
Minor 5ss
38.9
-1.3
3.3
53.9
43.5
Minor BPS
48.4
-0.1
2.1
66.44
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028063
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017978
110316902 - 110338115
21214