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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110325717_110328453_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
110325717 - 110328453
Intron Length:
2737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTAAATGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCCTAAATG
Flanking Amino Acid:
QDKLFCTVQQVDSAMLLEEV
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1.1
76.2
39.9
Major BPS
100
1.24
0.5
100
0
Major PPT
65.8
0.36
1
62.1
43.8
Minor 5ss
41.8
-0.9
3.2
57.8
46.8
Minor BPS
73.7
0.61
1.7
79.08
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028063
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017978
110316902 - 110338115
21214