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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110329659_110330305_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
110329659 - 110330305
Intron Length:
647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGACAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTGTCTTAAATT
Flanking Amino Acid:
TALLGIGQPEALTKAEDQFN
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
73.4
37.3
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
74.5
0.55
1.1
72.3
42
Minor 5ss
39.7
-1.2
3.1
56
48.1
Minor BPS
68.6
0.66
1.6
83.09
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028063
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017978
110316902 - 110338115
21214