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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110330419_110331835_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
110330419 - 110331835
Intron Length:
1417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGTA
5'SS Class:
major
3'SS Sequence:
GCTTAAACTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
CCTGCTTAAACT
Flanking Amino Acid:
GIGKVYLRQNRFSDALDQFM
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
75.3
34.3
Major BPS
76.2
0.65
1
67
39.8
Major PPT
69.2
0.43
1
63.9
41.5
Minor 5ss
38.7
-1.3
3
49.8
46.5
Minor BPS
55.6
0.25
1.8
70.57
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028063
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017978
110316902 - 110338115
21214