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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110331963_110333364_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
110331963 - 110333364
Intron Length:
1402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTATGTTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTATCTGATAT
Flanking Amino Acid:
IEETRKENLQLILKNCIEEC
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
82.3
0.73
0.8
80.7
36.6
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
49.9
0.08
1.8
74.86
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028063
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017978
110316902 - 110338115
21214