About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110336090_110338034_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
110336090 - 110338034
Intron Length:
1945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTATCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTGTTTTTATCA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
81.4
33.4
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
84.8
0.78
0.9
85.7
33.5
Minor 5ss
46.5
-0.4
2.8
65.7
45.4
Minor BPS
65.1
0.47
1.5
74.19
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012209
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012781
110333659 - 110359285
25627
Gene:
Ensembl Gene ID:
ENSAPLG00000028063
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017978
110316902 - 110338115
21214