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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110339272_110340021_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
110339272 - 110340021
Intron Length:
750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGCTAT
5'SS Class:
major
3'SS Sequence:
CCTGCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATAAA
U12 Branch Point Sequence:
GAGGCCTCAATA
Flanking Amino Acid:
QKWMKHLNNLGLTATENFFL
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.8
42.7
Major BPS
58.5
0.21
1.1
59.9
32.5
Major PPT
80
0.68
0.8
76.5
32.1
Minor 5ss
43.7
-0.7
3.2
55.1
49.1
Minor BPS
51.6
0.05
1.7
57.57
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012209
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012781
110333659 - 110359285
25627