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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110342642_110343389_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
110342642 - 110343389
Intron Length:
748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTCAAATCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTTCAAAT
Flanking Amino Acid:
EEKIFIEENTLDFAYFYEPC
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
80
32.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
70.5
0.46
0.9
67.1
39.1
Minor 5ss
42.9
-0.8
2.8
60.8
37.7
Minor BPS
66.1
0.58
1.6
85.04
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012209
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012781
110333659 - 110359285
25627