Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110345250_110347089_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

110345250 - 110347089

Intron Length:

1840

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAGAT

5'SS Class:

strong_major

3'SS Sequence:

CTTTGTATTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TTCTCATCAATT

Flanking Amino Acid:

NPHTRMVAVQVNHEVADRET

Intron Amino Acid Position:

619

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.3

0.8

84.2

26.4

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

78.3

0.64

0.9

70.4

Minor 5ss

32.1

-2

3.5

46.6

48.7

Minor BPS

62.3

0.47

1.8

81.49

40.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012209

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012781

110333659 - 110359285

25627