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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110347913_110349619_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
110347913 - 110349619
Intron Length:
1707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
ATTTACAGAAAT
Flanking Amino Acid:
LIKKSVEETKVSKNELDWLN
Intron Amino Acid Position:
691

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
68
0.45
1
57.8
39
Major PPT
86.6
0.82
0.7
85.5
29.2
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
49
0.01
2
75.52
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012209
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012781
110333659 - 110359285
25627