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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110354051_110354641_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
110354051 - 110354641
Intron Length:
591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TATTGCTCATTT
Flanking Amino Acid:
NIKKQMEKVEVGYEEKIQMV
Intron Amino Acid Position:
858

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.2
1.11
0.7
90.9
28.7
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
89.3
0.88
0.6
84.8
22.8
Minor 5ss
40.2
-1.1
3.1
58.6
45.9
Minor BPS
48.8
-0
2.2
73.35
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012209
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012781
110333659 - 110359285
25627