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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110358589_110358802_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
110358589 - 110358802
Intron Length:
214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
ATTTTTTGTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
TTTCAAGTAACA
Flanking Amino Acid:
KSKWKKIDSTASSDDPCTIC
Intron Amino Acid Position:
1149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.5
35
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
84.7
0.78
0.9
80.4
36.6
Minor 5ss
45
-0.5
2.8
65.4
39.4
Minor BPS
47.8
-0.1
2.4
71.45
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012209
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012781
110333659 - 110359285
25627