About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11036461_11037373_R

Intron Information:

Intron Rank:
135475
Intron Class:
major
Intron Phase:
Intron Coordinates:
11036461 - 11037373
Intron Length:
913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
ATAACTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71.7
40.1
Major BPS
75.1
0.62
1
65.6
41
Major PPT
89.8
0.9
0.7
84.2
30.9
Minor 5ss
36.4
-1.5
2.7
38.9
40.3
Minor BPS
57.2
0.31
1.6
71.88
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020302
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025099
11036053 - 11038134
2082