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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110365196_110365576_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
110365196 - 110365576
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTTCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTAAAT
U12 Branch Point Sequence:
CCCCTCTAAATT
Flanking Amino Acid:
ELQLVRVETCGCAEGYARDA
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
84
27.9
Major BPS
69.8
0.49
1.1
75.5
35.2
Major PPT
76.8
0.6
0.9
70.4
40
Minor 5ss
44.9
-0.5
2.8
58.5
40.5
Minor BPS
48.8
-0
1.7
59.73
44.7

Associated Gene:

Gene:
VPS26C
Ensembl Gene ID:
ENSAPLG00000011951
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012462
110364396 - 110385353
20958
ENSAPLT00000039533
110363353 - 110385353
22001