Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110377902_110385296_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

110377902 - 110385296

Intron Length:

7395

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTGAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

TTTCTCCCATTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTAAA

U12 Branch Point Sequence:

TTTTCTCCCATT

Flanking Amino Acid:

KRANKVYRCGEILSGVVVIT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

69.3

35.8

Major BPS

0.7

0.9

79.6

29.1

Major PPT

75.7

0.58

0.8

75.8

Minor 5ss

28.1

-2.5

27.7

36.2

Minor BPS

47.6

-0.1

2.2

76.58

40.6

Associated Gene:

Gene:

VPS26C

Ensembl Gene ID:

ENSAPLG00000011951

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039533

110363353 - 110385353

22001

ENSAPLT00000012462

110364396 - 110385353

20958