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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_11040268_11042084_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
11040268 - 11042084
Intron Length:
1817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTCTGGGGG
5'SS Class:
weak_major
3'SS Sequence:
CTTAGAGGGAGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTTAG
U12 Branch Point Sequence:
TCTGCATAGATT
Flanking Amino Acid:
APSSGEGGGGGDFLVGMIFL
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.3
0.1
1.4
42.3
44.9
Major BPS
67.5
0.43
1.5
65.7
43.2
Major PPT
42.1
-0.4
1.7
38.1
43.5
Minor 5ss
29.7
-2.3
3.3
29.1
43.5
Minor BPS
47
-0.1
2
67.49
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028199
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029763
11039915 - 11042211
2297