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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1104465_1105160_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1104465 - 1105160
Intron Length:
696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGGGCT
5'SS Class:
major
3'SS Sequence:
CCCCCCACCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTCAT
U12 Branch Point Sequence:
TCCCCCCCACCC
Flanking Amino Acid:
TTPVPDVEELHQVAKEAVAA
Intron Amino Acid Position:
572

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
65.5
37.3
Major BPS
73.5
0.58
1
73.6
32.5
Major PPT
63.9
0.31
0.8
53.9
29.3
Minor 5ss
30.6
-2.2
3.8
43.8
46
Minor BPS
42.7
-0.5
2.1
52.85
44.5

Associated Gene:

Gene:
CPA1
Ensembl Gene ID:
ENSAPLG00000030146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022364
1104068 - 1109613
5546