About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110485249_110487372_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
110485249 - 110487372
Intron Length:
2124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGCGTATT
5'SS Class:
major
3'SS Sequence:
GCTTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTATCTTCAAAT
Flanking Amino Acid:
FGSSCQLGQRIYQYIQSRFY
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
78
38.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
84
0.76
0.8
81.4
34.9
Minor 5ss
34.7
-1.7
3.1
42.3
44.6
Minor BPS
66
0.58
1.6
82.72
38

Associated Gene:

Gene:
DYRK1A
Ensembl Gene ID:
ENSAPLG00000011621
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012197
110468939 - 110491354
22416