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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110488647_110488903_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
110488647 - 110488903
Intron Length:
257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTGACTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AATTTTATATCT
Flanking Amino Acid:
GTTSSTSSSSGGSSGTSNSG
Intron Amino Acid Position:
508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
84.7
28.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.6
0.51
0.9
65.5
40.8
Minor 5ss
37.2
-1.4
3.5
55
49.2
Minor BPS
50.2
0.09
1.8
72.02
38.9

Associated Gene:

Gene:
DYRK1A
Ensembl Gene ID:
ENSAPLG00000011621
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012197
110468939 - 110491354
22416