About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110489029_110490730_F


Intron Information:

Intron Rank:
9

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
110489029 - 110490730

Intron Length:
1702

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTATGCACA

5'SS Class:
strong_major

3'SS Sequence:
CCTGTTAACATAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
GTTTAAT

U12 Branch Point Sequence:
CGCCTGTTAACA

Flanking Amino Acid:
AMDCETHSPQVRQQFPPPIG

Intron Amino Acid Position:
550

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
82.2
0.76
1
73.3
37.4

Major BPS
81.8
0.79
1.1
84
34.5

Major PPT
63.3
0.3
0.9
58
36.3

Minor 5ss
45.8
-0.4
2.5
58.4
45.9

Minor BPS
48
-0.1
2.1
56.59
42.8

Associated Gene:

Gene:
DYRK1A

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

110468939 - 110491354
22416