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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110529704_110570734_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
110529704 - 110570734
Intron Length:
41031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACATTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TCCTTATTAAAG
Flanking Amino Acid:
VILEGMVEATGMTCQARSSY
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1.1
81.6
33.2
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
84.7
0.78
0.8
79.3
32.7
Minor 5ss
49.4
-0
2.9
73.9
42.6
Minor BPS
51.5
-0
1.8
57.05
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028827
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036156
110529365 - 110641363
111999