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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1105361_1105714_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1105361 - 1105714
Intron Length:
354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGAGCA
5'SS Class:
major
3'SS Sequence:
CTCTTCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTGAA
U12 Branch Point Sequence:
CCACCCTGAATT
Flanking Amino Acid:
PNRNWNAGFGGSGSSSSPCS
Intron Amino Acid Position:
505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.3
68.7
36.4
Major BPS
57.2
0.18
1.1
48.9
36.6
Major PPT
80.8
0.69
0.7
75.7
26.5
Minor 5ss
26.1
-2.7
3
31.3
42.3
Minor BPS
57.5
0.31
1.5
67.17
43.6

Associated Gene:

Gene:
CPA1
Ensembl Gene ID:
ENSAPLG00000030146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022364
1104068 - 1109613
5546