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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1106338_1106419_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1106338 - 1106419
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCCCAT
U12 Branch Point Sequence:
TCCCCCACGACC
Flanking Amino Acid:
TENRPLYVLKFSKGGTNRPA
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.02
0.9
67.9
43.3
Major BPS
50.9
0.02
1.3
60.4
37.5
Major PPT
89.3
0.88
0.6
84.5
23.3
Minor 5ss
19.8
-3.5
3.8
28.6
43.8
Minor BPS
46.5
-0.2
1.9
56.75
41.8

Associated Gene:

Gene:
CPA1
Ensembl Gene ID:
ENSAPLG00000030146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022364
1104068 - 1109613
5546