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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1106994_1107249_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1106994 - 1107249
Intron Length:
256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCGGGT
5'SS Class:
major
3'SS Sequence:
CTCCCCCTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGACAC
U12 Branch Point Sequence:
CCCTCCCCAGTT
Flanking Amino Acid:
QELQDLEHLQLDFWLSPRGT
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.2
60.4
44.3
Major BPS
47
-0.1
1.3
52.4
43.3
Major PPT
73.7
0.53
0.8
64.8
30.7
Minor 5ss
42.6
-0.8
3.5
64.5
46.9
Minor BPS
42.9
-0.4
2
56.35
46.4

Associated Gene:

Gene:
CPA1
Ensembl Gene ID:
ENSAPLG00000030146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022364
1104068 - 1109613
5546