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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1107332_1107618_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1107332 - 1107618
Intron Length:
287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGGAGG
5'SS Class:
major
3'SS Sequence:
TCTGACCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
ACCCTCTGACCC
Flanking Amino Acid:
AVAAATEDFVGHQVLRIVPS
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.2
55.2
49
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
69.4
0.44
0.9
61.6
34.7
Minor 5ss
29.8
-2.3
3.3
30.4
43.1
Minor BPS
45.6
-0.3
1.7
50.27
40.4

Associated Gene:

Gene:
CPA1
Ensembl Gene ID:
ENSAPLG00000030146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022364
1104068 - 1109613
5546