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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110848603_110854589_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
110848603 - 110854589
Intron Length:
5987

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATTTCTTTAAGT
Flanking Amino Acid:
LFRLVHVERARTEAVRMEAT
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
78.3
0.64
0.7
77.3
24.7
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
76.9
0.92
1.5
90.07
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027981
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029378
110832084 - 110856711
24628