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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1108735_1108826_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1108735 - 1108826
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
CCTCTCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAC
U12 Branch Point Sequence:
CGTGTTTCACCT
Flanking Amino Acid:
YTYGSIVDTIYVASGTTVDW
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.1
59.2
39.9
Major BPS
72.3
0.55
1.2
77.4
37.4
Major PPT
75
0.56
0.7
69
24.7
Minor 5ss
33
-1.9
3
47
41.2
Minor BPS
44.7
-0.3
1.9
59.54
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006492
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006791
1108457 - 1111162
2706
Gene:
CPA1
Ensembl Gene ID:
ENSAPLG00000030146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022364
1104068 - 1109613
5546