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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1108912_1109194_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1108912 - 1109194
Intron Length:
283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGATGG
5'SS Class:
major
3'SS Sequence:
TTTTCTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAG
U12 Branch Point Sequence:
TGTCCCGCAGCT
Flanking Amino Acid:
SEPAPDFQELNELAEKAVND
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
61.2
40.1
Major BPS
58.6
0.22
1.5
69
38.9
Major PPT
89
0.88
0.8
84.5
30.4
Minor 5ss
32
-2.1
3
35.2
43.3
Minor BPS
45.5
-0.2
2.4
70.98
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006492
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006791
1108457 - 1111162
2706
Gene:
CPA1
Ensembl Gene ID:
ENSAPLG00000030146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022364
1104068 - 1109613
5546