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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110895427_110898262_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
110895427 - 110898262
Intron Length:
2836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTTTCCCTAACA
Flanking Amino Acid:
GPTSSRLANPGSGQIQLWQF
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
71.5
40.2
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
82.1
0.72
0.8
78
29.3
Minor 5ss
27.4
-2.6
2.7
31.3
42.4
Minor BPS
81.7
0.99
1.5
92.55
26.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015271
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029194
110894906 - 110960162
65257
ENSAPLT00000020807
110894276 - 111004123
109848
ENSAPLT00000043833
110894906 - 110960162
65257
ENSAPLT00000015948
110894906 - 111004172
109267
ENSAPLT00000032971
110894906 - 110960162
65257
ENSAPLT00000032146
110894906 - 111004123
109218