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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110898311_110900181_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
110898311 - 110900181
Intron Length:
1871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGGGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CACAATTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
CTTTCTTTCACA
Flanking Amino Acid:
PKTEDQRPQLDPYQILGPTS
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
75.7
34.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
69.1
0.43
0.9
65.5
40.3
Minor 5ss
30.4
-2.2
3.5
42.4
45.1
Minor BPS
69.1
0.59
1.7
78.6
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015271
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032146
110894906 - 111004123
109218
ENSAPLT00000029194
110894906 - 110960162
65257
ENSAPLT00000020807
110894276 - 111004123
109848
ENSAPLT00000043833
110894906 - 110960162
65257
ENSAPLT00000015948
110894906 - 111004172
109267
ENSAPLT00000032971
110894906 - 110960162
65257