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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110900239_110900603_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
110900239 - 110900603
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
ATTTCTCCATTT
Flanking Amino Acid:
SHTHPTPQSKATQPSSSTVP
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
74
36.4
Major BPS
61.3
0.28
1
62
30.6
Major PPT
83.8
0.76
0.8
80.9
29.8
Minor 5ss
32.2
-2
3
39.4
46.1
Minor BPS
47
-0.1
2
71.24
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015271
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015948
110894906 - 111004172
109267
ENSAPLT00000032971
110894906 - 110960162
65257
ENSAPLT00000032146
110894906 - 111004123
109218
ENSAPLT00000029194
110894906 - 110960162
65257
ENSAPLT00000020807
110894276 - 111004123
109848
ENSAPLT00000043833
110894906 - 110960162
65257