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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110900673_110907484_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
110900673 - 110907484
Intron Length:
6812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAC
U12 Branch Point Sequence:
TCTGCATGAAGG
Flanking Amino Acid:
EATQRITTRPDLPYEQARRS
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
76.1
32.7
Major BPS
69.3
0.48
1.1
67
39.5
Major PPT
93
0.97
0.6
88.6
20.7
Minor 5ss
39.8
-1.1
2.8
50
46
Minor BPS
45
-0.5
2.1
53.08
47.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015271
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043833
110894906 - 110960162
65257
ENSAPLT00000032971
110894906 - 110960162
65257
ENSAPLT00000015948
110894906 - 111004172
109267