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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110909698_110910693_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
110909698 - 110910693
Intron Length:
996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGCCTG
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTCATTT
Flanking Amino Acid:
LLSHLHYLRETPLPHLTSDD
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.1
57.3
47.4
Major BPS
100
1.24
0.5
100
0
Major PPT
88.5
0.87
0.7
84.9
29.9
Minor 5ss
42.8
-0.8
3.1
53.2
44.6
Minor BPS
57
0.3
1.7
79.21
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015271
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032971
110894906 - 110960162
65257
ENSAPLT00000032146
110894906 - 111004123
109218
ENSAPLT00000015948
110894906 - 111004172
109267