About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110910898_110914393_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
110910898 - 110914393
Intron Length:
3496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGACCC
5'SS Class:
major
3'SS Sequence:
GTAATAACACTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTGTAATAACA
Flanking Amino Acid:
TNERRVIVPADPTLWSTDHV
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.2
64.6
39.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
51.8
0.04
1
42.9
42
Minor 5ss
29.6
-2.3
2.8
35.5
40.6
Minor BPS
53
0.09
2
73.11
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015271
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032146
110894906 - 111004123
109218
ENSAPLT00000029194
110894906 - 110960162
65257
ENSAPLT00000015948
110894906 - 111004172
109267
ENSAPLT00000043833
110894906 - 110960162
65257
ENSAPLT00000032971
110894906 - 110960162
65257