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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_110914546_110929061_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
110914546 - 110929061
Intron Length:
14516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAAGG
5'SS Class:
major
3'SS Sequence:
CTTCTTTGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATAATCAAAG
Flanking Amino Acid:
ECNPNQVNGSRNSPDDCSVA
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.3
42.6
Major BPS
80
0.75
1
78.6
31
Major PPT
78.6
0.64
0.9
72.8
37.5
Minor 5ss
32.9
-1.9
2.9
40.9
44.9
Minor BPS
43.4
-0.6
2
50.27
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015271
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020807
110894276 - 111004123
109848
ENSAPLT00000043833
110894906 - 110960162
65257
ENSAPLT00000015948
110894906 - 111004172
109267
ENSAPLT00000032971
110894906 - 110960162
65257
ENSAPLT00000032146
110894906 - 111004123
109218
ENSAPLT00000029194
110894906 - 110960162
65257