About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1109614_1109715_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1109614 - 1109715
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTGAGTGTG
5'SS Class:
major
3'SS Sequence:
CGTCTGCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTCAC
U12 Branch Point Sequence:
AGGGATTCACCT
Flanking Amino Acid:
PDGYAFTHSSNRMWRKTRSI
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.6
0.37
1.3
63.5
42.9
Major BPS
64.5
0.36
1.2
69.3
37.7
Major PPT
66.7
0.38
0.9
57.7
38.5
Minor 5ss
32.7
-2
3.3
44.7
43.5
Minor BPS
40.4
-0.6
1.9
51.93
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006492
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006791
1108457 - 1111162
2706