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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1110305_1110528_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1110305 - 1110528
Intron Length:
224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCAAAT
U12 Branch Point Sequence:
TTTCTCCTCACA
Flanking Amino Acid:
YEKRPLYVLKFSTGGSNRPA
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
74.8
38.1
Major BPS
59.5
0.24
1.2
67.3
37.8
Major PPT
85.4
0.8
0.7
80.2
25.2
Minor 5ss
37
-1.5
3.2
48.2
47.9
Minor BPS
51.9
0.05
2.1
73.2
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006492
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006791
1108457 - 1111162
2706