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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111081007_111082312_F

Intron Information:

Intron Rank:
141562
Intron Class:
major
Intron Phase:
Intron Coordinates:
111081007 - 111082312
Intron Length:
1306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCTCA
5'SS Class:
major
3'SS Sequence:
AACACTTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
TGTGCTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.5
36.3
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
68.7
0.42
0.9
62.2
38.7
Minor 5ss
44.2
-0.6
2.8
57.5
46.7
Minor BPS
75.6
0.8
1.3
79.83
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026233
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025113
111080580 - 111083092
2513