About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111082452_111082561_F

Intron Information:

Intron Rank:
141563
Intron Class:
major
Intron Phase:
Intron Coordinates:
111082452 - 111082561
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GCTTTCTCACAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1.1
80
33
Major BPS
85
0.87
0.8
85.6
23
Major PPT
77.6
0.62
0.8
72.8
31
Minor 5ss
31.7
-2.1
3
42.5
44.2
Minor BPS
46.4
-0.2
1.9
56.07
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026233
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025113
111080580 - 111083092
2513