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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111120676_111122421_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111120676 - 111122421
Intron Length:
1746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
CTTCATGTGACC
Flanking Amino Acid:
HSGFPSAFPLMSEFGIRNMD
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.2
40.6
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
89.8
0.89
0.7
87.9
29.4
Minor 5ss
36.8
-1.5
3.5
53.4
44.8
Minor BPS
45.1
-0.4
2.2
59.72
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024773
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020915
111120619 - 111132458
11840