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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111128998_111129817_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111128998 - 111129817
Intron Length:
820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AACCACTTAATT
Flanking Amino Acid:
VPHWVNNNSLTVNVDQTPYG
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
94.3
1
0.5
93.3
15.5
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
60.1
0.39
1.5
70.37
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024773
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032850
111122422 - 111164271
41850
ENSAPLT00000020915
111120619 - 111132458
11840