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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111173994_111174067_F

Intron Information:

Intron Rank:
123520
Intron Class:
major
Intron Phase:
Intron Coordinates:
111173994 - 111174067
Intron Length:
74

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
AATTTCTGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
76.1
35
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
89.1
0.88
0.6
88.3
21.5
Minor 5ss
33.6
-1.9
2.9
41.3
45
Minor BPS
72.9
0.8
1.3
84.61
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016608
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041057
111173266 - 111174539
1274