About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111264706_111266131_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111264706 - 111266131
Intron Length:
1426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCGGT
5'SS Class:
major
3'SS Sequence:
ATTTATTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCTTTATAAAT
Flanking Amino Acid:
FVVAVGHNAAAFLSSFILDS
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.1
67.1
44.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.8
0.83
0.8
81.4
35.3
Minor 5ss
36.7
-1.5
3.7
55.4
48.8
Minor BPS
57.9
0.33
1.7
77.39
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014951
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019547
111259753 - 111266469
6717