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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111264706_111266329_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111264706 - 111266329
Intron Length:
1624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGCGGGG
5'SS Class:
major
3'SS Sequence:
ATTTATTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCTTTATAAAT
Flanking Amino Acid:
GRSAGGWRRRAFLSSFILDS
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.3
51
43.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.8
0.83
0.8
81.4
35.3
Minor 5ss
32.8
-2
3.8
46.4
49
Minor BPS
57.9
0.33
1.7
77.39
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014951
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015587
111259753 - 111266525
6773