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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111266242_111266329_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
111266242 - 111266329
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGCGGGG
5'SS Class:
major
3'SS Sequence:
GGCTGTGTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTGCAG
U12 Branch Point Sequence:
GGCTGCTGCAGG
Flanking Amino Acid:
REIRRRVEEKREVAVRWALP
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.3
51
43.3
Major BPS
38.5
-0.7
1.7
45
47.8
Major PPT
64.2
0.32
1
56.7
43.3
Minor 5ss
32.8
-2
3.8
46.4
49
Minor BPS
36.1
-1.2
2.3
37.22
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014951
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019547
111259753 - 111266469
6717