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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111278980_111280156_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
111278980 - 111280156
Intron Length:
1177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGAAA
5'SS Class:
strong_major
3'SS Sequence:
CCCCTTTCAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTGCTTTTACTT
Flanking Amino Acid:
SSTQQPTKMLRNVKQKPLKS
Intron Amino Acid Position:
1458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
76.8
33.4
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
72.7
0.51
0.8
69
29.9
Minor 5ss
31.6
-2.1
3.1
39.6
45.9
Minor BPS
55.8
0.26
1.6
72.08
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014570
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015277
111268416 - 111324851
56436